My Permissions/Essentials is being derpish...
Some Essentials commands work and others don't.
Even if they are in that group's permissions.
I removed all default commands in essentials.config... But I can still use some commands.
I set myself to player, and could only use some of the Nodes on the group...
I thought it was an issue with Capital letters but they were all lowercase and I could only use some.
EX:
Otherplugins.* = Works
essentials.gamemode = Works
essentials.give = works
essentials.afk = works
essentials.clearinventory - works
essentials.help = Nope
essentials.warp.<warpname> - Nope
essentials.spawn - Nope
essentials.fly - Nope

-_-

groups:
Owner:
options:
rank: '1'
rank-ladder: Owner
permissions:
- '*'
prefix: '&4[Command]'
inheritance:
- SMG
SMG:
options:
rank: '10'
rank-ladder: HStaff
permissions:
- '*'
prefix: '&5[Server-Manager]'
inheritance:
- SM
SM:
prefix: '&a[Staff-Manager]'
permissions:
- '*'
options:
rank: '100'
rank-ladder: HStaff
inheritance:
- HA
HA:
permissions:
- '*'
prefix: '&1[Head-Admin]'
options:
rank: '200'
rank-ladder: HStaff
inheritance:
- HA
HSP:
options:
rank: '400'
rank-ladder: Staff
inheritance:
- HMod
permissions:
- payday.admincommand
- -essentials.gamemode.*
- -essentials.enchant.*
- coreprotect.*
- permissions.user.promote.Standard
- multiverse.access.*
- bukkit.command.give
- essentials.give.*
- bukkit.command.plugins
- essentials.*
prefix: '&4[Head-Supervisor]'
Moderator:
options:
rank: '500'
rank-ladder: Staff
inheritance:
- Trusted
permissions:
- lwc.mod
- ChestShop.mod
- iConomy.holdings.others
- coreprotect.rollback
- permissions.user.promote.Standard
- essentials.break.bedrock
- essentials.break
- essentials.bigtree
- essentials.tree
- essentials.time
- essentials.time.set
- essentials.helpop.receive
- essentials.seen.banreason
- essentials.list.hidden
- essentials.ban
- essentials.ban.offline
- essentials.broadcast
- essentials.invsee
- essentials.kill.*
- essentials.mute
- essentials.tempban.offline
- essentials.tempban
- essentials.weather
- -essentials.kick.exempt
- essentials.kick.*
prefix: '&c[Moderator]'
HMod:
options:
rank: '450'
rank-ladder: Staff
inheritance:
- Moderator
permissions:
- SimpleFly.nodamage
- permissions.user.promote.Standard
- essentials.god
prefix: '&1[Head-Mod]'
Trusted:
options:
rank: '550'
rank-ladder: Staff
inheritance:
- Veteran
permissions:
- worldgaurd.region.wand
- WorldEdit.navigation.thru
- essentials.jumpto
- mcjobs.paycreative
- coreprotect.inspect
- essentials.kit.Staff
- essentials.tphere
- essentials.tp.others
- essentials.tp
- essentials.chat.color
- essentials.chat.(color|format|magic|question|shout)
- essentials.kick
prefix: '&2[Trusted]'
Special:
options:
rank: '600'
rank-ladder: Special
inheritance:
- Trusted
permissions:
- essentials.gamemode
prefix: '&1[Special]'
DAdmin:
options:
rank: '625'
rank-ladder: Donator
inheritance:
- ADonor
permissions:
- -essentials.gamemode.*
- -essentials.enchant.*
- -essentials.tempban.*
- -essentials.ban.*
- permissions.user.promote.Standard
- essentials.ext
- essentials.fireball
- essentials.killall
- essentials.unlimited.*
- essentials.itemspawn.*
- essentials.give.*
prefix: '&5[Donor-Admin]'
Legendary:
options:
rank: '650'
rank-ladder: Donator
inheritance:
- ADonor
permissions:
- -essentials.itemspawn.item-(41|42|293|56|57|383|310|384|388|90)
- -essentials.itemspawn.item-(276-279)
- -essentials.itemspawn.item-(264-266)
- -essentials.itemspawn.item-(119|120|122|19|129|133|264|265|266|276|277|278)
- -essentials.itemspawn.item-(14-16)
- -essentials.itemspawn.item-7
- essentials.itemspawn.*
prefix: '&e[Legendary]'
ADonor:
options:
rank: '675'
rank-ladder: Donator
inheritance:
- BDonor
permissions:
- essentials.killall
- essentials.weather.*
- essentials.heal
prefix: '&d[A-Donor]'
BDonor:
options:
rank: '700'
rank-ladder: Donator
inheritance:
- CDonor
permissions:
- essentials.time.*
- essentials.kick
prefix: '&d[B-Donor]'
CDonor:
options:
rank: '725'
rank-ladder: Donator
inheritance:
- DDonor
permissions:
- essentials.feed
prefix: '&d[C-Donor]'
DDonor:
options:
rank: '750'
rank-ladder: Donator
inheritance:
- EDonor
permissions:
- essentials.me
prefix: '&d[D-Donor]'
EDonor:
options:
rank: '775'
rank-ladder: Donator
inheritance:
- FDonor
permissions:
- essentials.teleport.cooldown.bypass
- essentials.teleport.timer.bypass
- essentials.fly
prefix: '&e[E-Donor]'
Veteran:
options:
rank: '825'
rank-ladder: Standard
inheritance:
- Player
permissions:
- ChestShop.nofee
- ChestShop.name.*
- worldgaurd.stack.damaged
- worldgaurd.stack.illegitimate
- worldgaurd.locate
- payday.vip
- essentials.chat.color
- essentials.chat.(color|format|magic|question|shout)
- bukkit.command.plugins
prefix: '&b[Veteran]'
Player:
options:
rank: '850'
rank-ladder: Standard
inheritance:
- Guest
permissions:
- Essentials.Kit.Tools
- Essentials.kit.tools
- essentials.kit.pvp
- essentials.warp.donate
- lwc.protect
- ChestShop.shop.create
- mcjobs.world.all
- mcjobs.jobsavail.*
- mcjobs.jobs.*
- iConomy.accounts.take
- iConomy.accounts.give
- iConomy.accounts.remove
- iConomy.accounts.create
- iConomy.payment
- iConomy.help
- iConomy.holdings
- treeassist.toggle
- autocraft.*
- essentials.warp.shop
- multiverse.access.Pixel
- multiverse.access.Main_Nether
- multiverse.access.Main_The_End
- multiverse.access.pixel
- essentials.access.Main_Nether
- essentials.access.Main_The_End
- essentials.access.Pixel
- essentials.warp.Nether
- essentials.warp.End
- essentials.warp.Pixel
- essentials.depth
- essentials.helpop
- essentials.ignore
- essentials.mail.send
- essentials.mail
- essentials.ping
- essentials.rules
- essentials.kick.notify
- essentials.fly
- essentials.kit.tools
- essentials.gc
- essentials.spawn
- essentials.delhome
- essentials.home
- essentials.sethome
- essentials.sethome.multiple.unlimited
- essentials.teleport.cooldown.bypass
- essentials.teleport.time.bypass
- essentials.warp.help
- essentials.warp.list
prefix: '&6[Player]'
Guest:
options:
rank: '875'
rank-ladder: Standard
default: true
permissions:
- Essentials.help.*
- essentials.help.*
- essentials.warp.help
- essentials.warp.rules
- -lwc.admin.*
- payday.normal
- SimpleFly.teleport
- SimpleFly.fly
- treeassist.replant
- treeassist.autoremove
- multiverse.access.Main
- essentials.access.Main
- essentials.motd
- essentials.spawn
- essentials.nocommandcost.all
- essentials.warp.Main
- essentials.tpdeny
- essentials.tpahere
- essentials.tpaccept
- essentials.tpaall
- essentials.tpa
- essentials.back.ondeath
- essentials.ignore
- essentials.back
- essentials.clearinventory
- essentials.whois
- essentials.spawner.chicken
- essentials.spawner.blaze
- essentials.spawner.creeper
- essentials.spawner.skeleton
- essentials.spawner.zombie
- essentials.spawner.cow
- essentials.spawner.sheep
- essentials.spawner.pig
- essentials.suicide
- essentials.seen.*
- essemtials.realname
- essentials.near
- essentials.msg.*
- essentials.me
- essentials.mail.*
- essentials.list
- essentials.info
- essentials.helpop
- essentials.afk
prefix: '&8[Guest]'
worlds:
Main:
permissions:
- -SimpleFly.fly
- -essentials.fly.*
Noob:
options:
rank: '1000'
rank-ladder: Noob
permissions:
- -*
inheritance:
- Noob
prefix: '&7[Noob]'
Admin:
options:
rank: '300'
permissions:
- ChestShop.admin
- treeassist.reload
- coreprotect.restore
- WorldEdit.*
- bukkit.command.plugins
- Essentials.*
inheritance:
- HSP
prefix: '&9[Admin]'
FDonor:
options:
rank: '800'
rank-ladder: Donator
inheritance:
- Player
prefix: '&d[F-Donor]'
permissions:
- essentials.warp.Donate
- payday.vip
- essentials.warp.Donator
- multiverse.access.Donator
- essentials.help.*
- essentials.kit.Donor
- essentials.chat.color
worlds:
Donator:
permissions:
- essentials.gamemode
users:
xxmohxy:
group:
- Player
prefix: '&4[Owner]'
options:
rank: '0'

If someone could come on and help me out that would be awesome.
I only need 1-2 people though... not 17 people with Admin running around :F

(Only permissions that work is on latter HStaff, (High-Rank-Staff) ["*"]

If someone knows what it is please post it in the comments below.